After using Hot Cues, loops aren't snapping to grid

Hi there, 

Sometimes when I press a hot cue (CDJ 2000 Nexus) to jump to a different section of the track to mix in a new one, shortly afterwards I will loop the existing track to help bring in the new track, however, on quite a few occasions the loop doesn't snap to the grid and plays completely out of time. I have the quantize setting on both CDJ's, and my tracks have been analyzed in Rekordbox. I've looked at the tracks in Rekordbox to check the grids and make sure they are aligned correctly, and they are. 

I've noticed this seems to happen when I use a hot cue to jump to a new section of the track, and then try and loop shortly/almost immediately afterwards. It doesn't seem to be an issue when I just loop the track without using a hot cue to jump to a new point.

I hope the above makes sense and any feedback would be much appreciated!